The BLASTn algorithm was used to identify Expressed Sequence Tags (ESTs) expressed in the heart of thirteen-lined ground squirrels. ESTs which showed multiple identification tags were aligned as described by Brauch et al. to create the contigs found in this library. Occasionally multiple contigs were created from the same gene-specific ESTs in cases where complete alignment could not be achieved. These identifications are noted with the contig number in parentheses.
Name Identification |
Length |
| Actin alpha cardiac |
1462 |
| Actinin, alpha 2 (ACTN2) |
2124 |
| Acyl-Coenzyme A dehydrogenase, long chain |
1229 |
| ADP,ATP translocase (solute carrier family 25) |
1385 |
| ADP-ribosyltransferase 3 |
1479 |
| Aldolase A, fructose bisphosphate |
1449 |
| ATP synthase H+ transporting, mitochondrial F0 complex |
815 |
| ATPase Ca++ transporting, cardiac, slow twitch 2(SERCA2a) (Contig 1) |
1149 |
| ATPase Ca++ transporting, cardiac, slow twitch 2(SERCA2a) (Contig 2) |
1219 |
| Atrical natriuretic peptide precursor A |
860 |
| Barrier to autointegration factor 1 |
763 |
| Calcium/calmodulin dependent protein kinase II delta |
929 |
| Calmodulin2 phosphorylase kinase, delta |
778 |
| CDK2-associated protein 1 (CDK2AP1), p12(DOC-1) (Contig 1) |
1477 |
| CDK2-associated protein 1 (CDK2AP1), p12(DOC-1) (Contig 2) |
878 |
| COP9 constitutive photomorphogenic homolog subunit 8 |
1326 |
| Creatine phosphokinase (M isoenzyme) (Contig 1) |
1195 |
| Creatine phosphokinase (M isoenzyme) (Contig 2) |
917 |
| Cystatin F (leukocystatin) |
857 |
| Cytochrome b |
1243 |
| Deubiquitinating enzyme (UNPH4) |
895 |
Elongation factor 1 A2 |
1032 |
| Elongation factor 1 A1 |
1308 |
| Eukaryotic translation initiation factor 3, subunit 5 (Contig 1) |
581 |
| Eukaryotic translation initiation factor 3 subunit 5 (Contig 2) |
581 |
| Eukaryotic translation initiation factor 4 gamma (Contig 1) |
931 |
| Eukaryotic translation initiation factor 4 gamma (Contig 2) |
1505 |
| Eukaryotic translation initiation factor 5a (Contig 1) |
660 |
| Eukaryotic translation initiation factor 5a (Contig 2) |
660 |
| Ferritin, heavy polypeptide 1 |
1089 |
| Four and a half LIM domain ll (limpet) |
2126 |
| Glyceraldehyde-3-phosphate dehydrogenase |
1303 |
| Heart pancreatic triacylglycerol lipase |
2439 |
| Heart type fatty acid binding protein |
736 |
| Heat shock 70kDa Protein 8 |
1542 |
| Hemoglobin alpha chain |
593 |
| Heparin sulfate 6-O-sulfotransferase (Contig 1) |
977 |
| Heparin sulfate 6-O-sulfotransferase (Contig 2) |
947 |
| Hydroxysteroid dehydrogenase-like protein |
1413 |
| Isocitrate dehydrogenase 2 (NADP+) |
1528 |
| KIAA0295 protein |
908 |
| Lactate dehydrogenase B |
1269 |
| Long-chain acyl-CoA dehydrogenase |
1189 |
| Lymphotoxin-beta (LT-beta) |
1097 |
| Lysosomal-associated protein transmembrane 4 alpha |
1010 |
| MEGF5 |
924 |
| MLC2, nonmuscle myosin light chain 2 |
790 |
| Myoglobin |
1094 |
| Myosin heavy chain alpha cardiac |
1495 |
| Myosin heavy polypeptide 7, cardiac muscle |
1660 |
| Myosin, heavy polypeptide 6, cardiac muscle |
700 |
| Myosin heavy chain slow isoform |
822 |
| Myosin light chain2 cardiac ventricular |
1127 |
| Myosin light chain kinase (Contig 1) |
1105 |
| Myosin light chain kinase (Contig 2) |
800 |
| Myosin light polypeptide2, regulatory, cardiac, slow |
1026 |
| Myosin regulatory light chain ventricular isoform |
909 |
| NADH dehydrogenase |
1411 |
| NADH dehydrogenase (ubiquinone) Fe-S protein 1 |
1207 |
| NADH dehydrogenase subunit 1 |
2223 |
| NADH dehydrogenase subunit 4 |
725 |
| NADH-ubiquinone oxireductase AGGG subunit |
523 |
| NADH-ubiquinone oxireductase B8 subunit |
462 |
| NADH-ubiquinone oxireductase subunit 2 |
1150 |
| Natruiretic peptide precursor A |
842 |
| ncx1 gene (exon 12) (Contig 1) |
1124 |
| ncx1 gene (exon 12) (Contig 2) |
854 |
| NDRG family member 4 |
1035 |
| Nicotinamide nucleotide transhydrogenase |
2138 |
| NRF1 protein (NRF1) |
810 |
| NS1 binding protein |
835 |
| Peptidylprolyl isomerase D (cyclophilin D) |
661 |
| Phosphofructokinase (Contig 1) |
1116 |
| Phosphofructokinase (Contig 2) |
756 |
| Phospholamban |
1535 |
| Phosphorylase B Kinase Beta Regulatory Chain |
777 |
| Phosphorylase kinase, beta |
706 |
| PDZ and LIM domain 1 (elfin) |
814 |
| Plakoglobin |
788 |
| Poly(A) binding protein |
717 |
| Polyubiquitin |
488 |
| Preoxiredoxin 1 (PRDX1) |
889 |
| Putative glialblastoma cell differentiation-related protein |
640 |
| Putative leucine rich repeat protein |
611 |
| Putative NFkB activating protein HNLF |
1050 |
| Pyruvate dehydrogenase kinase isoform 4 |
1490 |
| RAB1B Ras oncogene family |
707 |
| rab11 binding protein |
839 |
| Short interspersed element (SINE-B1-dID-like element) |
1376 |
| SLIT3 (UNQ691) |
646 |
| Slow skeletal troponin C (TnC) |
787 |
| Skeletal muscle alpha-tropomyosin (htM-alpha) |
1270 |
| Smhs2 homolog |
893 |
| Sorbin and SH3 domain containing 1 (SORBS1) (Contig 1) |
1667 |
| Sorbin and SH3 domain containing 1 (SORBS1) (Contig 2) |
1524 |
| Stathmin |
877 |
| Succinate-CoA ligase, ADP-forming, beta subunit |
1196 |
| Succinate-CoA ligase, GDP-forming, alpha subunit |
1247 |
| Succinate dehydrogenase complex subunit A, flavoprotein |
833 |
| Titin (Contig 1) |
2271 |
| Titin (Contig 2) |
835 |
| Titin-cap (telethonin) |
1003 |
| Transcriptional coactivator tubedown-100 (TBDN100) |
805 |
| Translation repressor NAT1 |
891 |
| Trifunctional enzyme beta subunit |
305 |
| Triosephosphate isomerase 1 |
847 |
| Ubiquinol-cytochrome c reductase hinge protein |
715 |
| Ubiquitin-activating enzyme E1 |
835 |
| Ubiquitin carboxy-terminal hydrolase 1 |
890 |
| Unactive progresterone receptor 23kD |
905 |
| Voltage-dependant anion channel 2 |
1335 |
| Woodchuck hepatitis virus DNA |
932 |
| Zinc finger protein 574 |
888 |
Matthew T. Andrews
